{"id":10,"date":"2023-10-11T09:18:04","date_gmt":"2023-10-11T09:18:04","guid":{"rendered":"https:\/\/bdlab.bilkent.edu.tr\/?page_id=10"},"modified":"2023-11-06T08:47:54","modified_gmt":"2023-11-06T08:47:54","slug":"projects","status":"publish","type":"page","link":"https:\/\/bdlab.bilkent.edu.tr\/?page_id=10","title":{"rendered":"Projects"},"content":{"rendered":"\n<p style=\"font-size:22px\"><strong>Physiological and Molecular Role of Enteric Nervous System in Homeostasis and Diseases<\/strong><\/p>\n\n\n\n<figure class=\"wp-block-gallery has-nested-images columns-4 is-cropped wp-block-gallery-1 is-layout-flex wp-block-gallery-is-layout-flex\">\n<figure class=\"wp-block-image size-large\"><img decoding=\"async\" loading=\"lazy\" width=\"1024\" height=\"1024\" data-id=\"209\" src=\"https:\/\/bdlab.bilkent.edu.tr\/wp-content\/uploads\/2023\/10\/Colon_Frozen_PFA_HFD_24-Weeks_Control-Cage10-NT-1_DAPISum_S100bStd_20X_03062022-1024x1024.jpg\" alt=\"\" class=\"wp-image-209\" srcset=\"https:\/\/bdlab.bilkent.edu.tr\/wp-content\/uploads\/2023\/10\/Colon_Frozen_PFA_HFD_24-Weeks_Control-Cage10-NT-1_DAPISum_S100bStd_20X_03062022-1024x1024.jpg 1024w, https:\/\/bdlab.bilkent.edu.tr\/wp-content\/uploads\/2023\/10\/Colon_Frozen_PFA_HFD_24-Weeks_Control-Cage10-NT-1_DAPISum_S100bStd_20X_03062022-300x300.jpg 300w, https:\/\/bdlab.bilkent.edu.tr\/wp-content\/uploads\/2023\/10\/Colon_Frozen_PFA_HFD_24-Weeks_Control-Cage10-NT-1_DAPISum_S100bStd_20X_03062022-150x150.jpg 150w, https:\/\/bdlab.bilkent.edu.tr\/wp-content\/uploads\/2023\/10\/Colon_Frozen_PFA_HFD_24-Weeks_Control-Cage10-NT-1_DAPISum_S100bStd_20X_03062022-768x768.jpg 768w, https:\/\/bdlab.bilkent.edu.tr\/wp-content\/uploads\/2023\/10\/Colon_Frozen_PFA_HFD_24-Weeks_Control-Cage10-NT-1_DAPISum_S100bStd_20X_03062022-1536x1536.jpg 1536w, https:\/\/bdlab.bilkent.edu.tr\/wp-content\/uploads\/2023\/10\/Colon_Frozen_PFA_HFD_24-Weeks_Control-Cage10-NT-1_DAPISum_S100bStd_20X_03062022.jpg 2048w\" sizes=\"(max-width: 1024px) 100vw, 1024px\" \/><figcaption class=\"wp-element-caption\"><strong>Colon<\/strong><\/figcaption><\/figure>\n\n\n\n<figure class=\"wp-block-image size-full\"><img decoding=\"async\" loading=\"lazy\" width=\"2048\" height=\"1536\" data-id=\"213\" src=\"https:\/\/bdlab.bilkent.edu.tr\/wp-content\/uploads\/2023\/10\/02.01.2023colon-p6-day3-well43697-1.jpg\" alt=\"\" class=\"wp-image-213\" srcset=\"https:\/\/bdlab.bilkent.edu.tr\/wp-content\/uploads\/2023\/10\/02.01.2023colon-p6-day3-well43697-1.jpg 2048w, https:\/\/bdlab.bilkent.edu.tr\/wp-content\/uploads\/2023\/10\/02.01.2023colon-p6-day3-well43697-1-300x225.jpg 300w, https:\/\/bdlab.bilkent.edu.tr\/wp-content\/uploads\/2023\/10\/02.01.2023colon-p6-day3-well43697-1-1024x768.jpg 1024w, https:\/\/bdlab.bilkent.edu.tr\/wp-content\/uploads\/2023\/10\/02.01.2023colon-p6-day3-well43697-1-768x576.jpg 768w, https:\/\/bdlab.bilkent.edu.tr\/wp-content\/uploads\/2023\/10\/02.01.2023colon-p6-day3-well43697-1-1536x1152.jpg 1536w\" sizes=\"(max-width: 2048px) 100vw, 2048px\" \/><figcaption class=\"wp-element-caption\"><strong>Colon Organoids<\/strong><\/figcaption><\/figure>\n\n\n\n<figure class=\"wp-block-image size-large\"><img decoding=\"async\" loading=\"lazy\" width=\"1024\" height=\"951\" data-id=\"242\" src=\"https:\/\/bdlab.bilkent.edu.tr\/wp-content\/uploads\/2023\/10\/s100bstd_pdgfrasum-crop-1024x951.jpg\" alt=\"\" class=\"wp-image-242\" srcset=\"https:\/\/bdlab.bilkent.edu.tr\/wp-content\/uploads\/2023\/10\/s100bstd_pdgfrasum-crop-1024x951.jpg 1024w, https:\/\/bdlab.bilkent.edu.tr\/wp-content\/uploads\/2023\/10\/s100bstd_pdgfrasum-crop-300x279.jpg 300w, https:\/\/bdlab.bilkent.edu.tr\/wp-content\/uploads\/2023\/10\/s100bstd_pdgfrasum-crop-768x713.jpg 768w, https:\/\/bdlab.bilkent.edu.tr\/wp-content\/uploads\/2023\/10\/s100bstd_pdgfrasum-crop.jpg 1336w\" sizes=\"(max-width: 1024px) 100vw, 1024px\" \/><figcaption class=\"wp-element-caption\"><strong>Colon Organoid<\/strong><\/figcaption><\/figure>\n\n\n\n<figure class=\"wp-block-image size-large\"><img decoding=\"async\" loading=\"lazy\" width=\"1024\" height=\"1024\" data-id=\"210\" src=\"https:\/\/bdlab.bilkent.edu.tr\/wp-content\/uploads\/2023\/10\/Matrigel2_Glia-Neuron_6gunglia3gunnbplus_DAPIMax_Tuj1Max_20Xoil_02102023-1024x1024.jpg\" alt=\"\" class=\"wp-image-210\" srcset=\"https:\/\/bdlab.bilkent.edu.tr\/wp-content\/uploads\/2023\/10\/Matrigel2_Glia-Neuron_6gunglia3gunnbplus_DAPIMax_Tuj1Max_20Xoil_02102023-1024x1024.jpg 1024w, https:\/\/bdlab.bilkent.edu.tr\/wp-content\/uploads\/2023\/10\/Matrigel2_Glia-Neuron_6gunglia3gunnbplus_DAPIMax_Tuj1Max_20Xoil_02102023-300x300.jpg 300w, https:\/\/bdlab.bilkent.edu.tr\/wp-content\/uploads\/2023\/10\/Matrigel2_Glia-Neuron_6gunglia3gunnbplus_DAPIMax_Tuj1Max_20Xoil_02102023-150x150.jpg 150w, https:\/\/bdlab.bilkent.edu.tr\/wp-content\/uploads\/2023\/10\/Matrigel2_Glia-Neuron_6gunglia3gunnbplus_DAPIMax_Tuj1Max_20Xoil_02102023-768x768.jpg 768w, https:\/\/bdlab.bilkent.edu.tr\/wp-content\/uploads\/2023\/10\/Matrigel2_Glia-Neuron_6gunglia3gunnbplus_DAPIMax_Tuj1Max_20Xoil_02102023-1536x1536.jpg 1536w, https:\/\/bdlab.bilkent.edu.tr\/wp-content\/uploads\/2023\/10\/Matrigel2_Glia-Neuron_6gunglia3gunnbplus_DAPIMax_Tuj1Max_20Xoil_02102023.jpg 2048w\" sizes=\"(max-width: 1024px) 100vw, 1024px\" \/><figcaption class=\"wp-element-caption\"><strong>Enteric Neuron<\/strong>s<\/figcaption><\/figure>\n<\/figure>\n\n\n\n<p class=\"has-small-font-size\">As a scientist, looking forward in intestinal stem cell research, it is hard to think the excitement diminishing decades to come. The incentives are huge since we now have the opportunity to go from elaborate analysis of single cell transcriptomics to broad landscape that cover tissue development. The more appealing point is that intestine is what we call \u2018structured\u2019. On the one hand, we can observe dynamically getting renewed epithelium which is fuelled by intestinal epithelial stem cells. The self-renewal, proliferation and differentiation of these stem cells are regulated by the closely localized niche cells. On the other, a critical compartment is enteric nervous system (ENS) which is interspersed between the mucosal barrier and within the muscle layers. It coordinates simultaneously both gastrointestinal motility and also a wide range of gastrointestinal functions such as secretion, nutrient absorption, immune regulation and defence. As having its complexity, the ENS is conceived the second brain. <strong>Notably, we are missing the knowledge showing how the second brain works.&nbsp; We believe that it has now become possible to tackle this complex question that is central to understand the communication between the ENS and other compartments including epithelial cells, epithelial stem cells, mesenchymal cells, smooth muscle and immune cells both during homeostasis and disease.<\/strong>&nbsp;<\/p>\n\n\n\n<div style=\"height:20px\" aria-hidden=\"true\" class=\"wp-block-spacer\"><\/div>\n\n\n\n<figure class=\"wp-block-gallery has-nested-images columns-4 is-cropped wp-block-gallery-3 is-layout-flex wp-block-gallery-is-layout-flex\">\n<figure class=\"wp-block-image size-large\"><img decoding=\"async\" loading=\"lazy\" width=\"1024\" height=\"1024\" data-id=\"274\" src=\"https:\/\/bdlab.bilkent.edu.tr\/wp-content\/uploads\/2023\/10\/crop-1-1024x1024.jpg\" alt=\"\" class=\"wp-image-274\" srcset=\"https:\/\/bdlab.bilkent.edu.tr\/wp-content\/uploads\/2023\/10\/crop-1-1024x1024.jpg 1024w, https:\/\/bdlab.bilkent.edu.tr\/wp-content\/uploads\/2023\/10\/crop-1-300x300.jpg 300w, https:\/\/bdlab.bilkent.edu.tr\/wp-content\/uploads\/2023\/10\/crop-1-150x150.jpg 150w, https:\/\/bdlab.bilkent.edu.tr\/wp-content\/uploads\/2023\/10\/crop-1-768x768.jpg 768w, https:\/\/bdlab.bilkent.edu.tr\/wp-content\/uploads\/2023\/10\/crop-1.jpg 1171w\" sizes=\"(max-width: 1024px) 100vw, 1024px\" \/><figcaption class=\"wp-element-caption\"><strong>Liver Portal Triad<\/strong><\/figcaption><\/figure>\n\n\n\n<figure class=\"wp-block-image size-large\"><img decoding=\"async\" loading=\"lazy\" width=\"1024\" height=\"1024\" data-id=\"269\" src=\"https:\/\/bdlab.bilkent.edu.tr\/wp-content\/uploads\/2023\/10\/liver-seed2-p1-day5-21.12.22-9-light3533-1024x1024.jpg\" alt=\"\" class=\"wp-image-269\" srcset=\"https:\/\/bdlab.bilkent.edu.tr\/wp-content\/uploads\/2023\/10\/liver-seed2-p1-day5-21.12.22-9-light3533-1024x1024.jpg 1024w, https:\/\/bdlab.bilkent.edu.tr\/wp-content\/uploads\/2023\/10\/liver-seed2-p1-day5-21.12.22-9-light3533-300x300.jpg 300w, https:\/\/bdlab.bilkent.edu.tr\/wp-content\/uploads\/2023\/10\/liver-seed2-p1-day5-21.12.22-9-light3533-150x150.jpg 150w, https:\/\/bdlab.bilkent.edu.tr\/wp-content\/uploads\/2023\/10\/liver-seed2-p1-day5-21.12.22-9-light3533-768x768.jpg 768w, https:\/\/bdlab.bilkent.edu.tr\/wp-content\/uploads\/2023\/10\/liver-seed2-p1-day5-21.12.22-9-light3533.jpg 1536w\" sizes=\"(max-width: 1024px) 100vw, 1024px\" \/><figcaption class=\"wp-element-caption\"><strong>Liver Ductal Organoids<\/strong><\/figcaption><\/figure>\n\n\n\n<figure class=\"wp-block-image size-large\"><img decoding=\"async\" loading=\"lazy\" width=\"1024\" height=\"1024\" data-id=\"268\" src=\"https:\/\/bdlab.bilkent.edu.tr\/wp-content\/uploads\/2023\/10\/5-Liver-org-EMT-control-dapi.bluemax-opnwhitemax-ecadgreenmax-vimredmax-paraffin-PFA-40x-tris-1-1024x1024.jpg\" alt=\"\" class=\"wp-image-268\" srcset=\"https:\/\/bdlab.bilkent.edu.tr\/wp-content\/uploads\/2023\/10\/5-Liver-org-EMT-control-dapi.bluemax-opnwhitemax-ecadgreenmax-vimredmax-paraffin-PFA-40x-tris-1-1024x1024.jpg 1024w, https:\/\/bdlab.bilkent.edu.tr\/wp-content\/uploads\/2023\/10\/5-Liver-org-EMT-control-dapi.bluemax-opnwhitemax-ecadgreenmax-vimredmax-paraffin-PFA-40x-tris-1-300x300.jpg 300w, https:\/\/bdlab.bilkent.edu.tr\/wp-content\/uploads\/2023\/10\/5-Liver-org-EMT-control-dapi.bluemax-opnwhitemax-ecadgreenmax-vimredmax-paraffin-PFA-40x-tris-1-150x150.jpg 150w, https:\/\/bdlab.bilkent.edu.tr\/wp-content\/uploads\/2023\/10\/5-Liver-org-EMT-control-dapi.bluemax-opnwhitemax-ecadgreenmax-vimredmax-paraffin-PFA-40x-tris-1-768x768.jpg 768w, https:\/\/bdlab.bilkent.edu.tr\/wp-content\/uploads\/2023\/10\/5-Liver-org-EMT-control-dapi.bluemax-opnwhitemax-ecadgreenmax-vimredmax-paraffin-PFA-40x-tris-1.jpg 1428w\" sizes=\"(max-width: 1024px) 100vw, 1024px\" \/><figcaption class=\"wp-element-caption\"><strong>Liver Ductal Organoid<\/strong><\/figcaption><\/figure>\n\n\n\n<figure class=\"wp-block-image size-large\"><img decoding=\"async\" loading=\"lazy\" width=\"1024\" height=\"1024\" data-id=\"272\" src=\"https:\/\/bdlab.bilkent.edu.tr\/wp-content\/uploads\/2023\/10\/wadwd-1024x1024.jpg\" alt=\"\" class=\"wp-image-272\" srcset=\"https:\/\/bdlab.bilkent.edu.tr\/wp-content\/uploads\/2023\/10\/wadwd-1024x1024.jpg 1024w, https:\/\/bdlab.bilkent.edu.tr\/wp-content\/uploads\/2023\/10\/wadwd-300x300.jpg 300w, https:\/\/bdlab.bilkent.edu.tr\/wp-content\/uploads\/2023\/10\/wadwd-150x150.jpg 150w, https:\/\/bdlab.bilkent.edu.tr\/wp-content\/uploads\/2023\/10\/wadwd-768x768.jpg 768w, https:\/\/bdlab.bilkent.edu.tr\/wp-content\/uploads\/2023\/10\/wadwd-1536x1536.jpg 1536w, https:\/\/bdlab.bilkent.edu.tr\/wp-content\/uploads\/2023\/10\/wadwd.jpg 2048w\" sizes=\"(max-width: 1024px) 100vw, 1024px\" \/><figcaption class=\"wp-element-caption\"><strong>Liver Ductal Organoid<\/strong><\/figcaption><\/figure>\n<\/figure>\n\n\n\n<p style=\"font-size:22px\"><strong>Role of cellular niche in response and progression of liver fibrosis and consequences<\/strong><\/p>\n\n\n\n<p class=\"has-small-font-size\">The liver is an important multitasking organ with diverse functions to maintain body homeostasis. Adjustment of glucose level, detoxification, secretion of blood proteins, and synthesis of bile acids are the among these crucial functions. The fibrosis is one of the most common liver injury types. Although liver has a high capacity for regeneration via the proliferation of cells, this regeneration ability is directly dependent on the severity of fibrosis. We are keen to understand the mechanism of fibrosis in liver. &nbsp;<\/p>\n\n\n\n<div style=\"height:48px\" aria-hidden=\"true\" class=\"wp-block-spacer\"><\/div>\n\n\n\n<p><strong>This projects are funded by EMBO Installation Grant and T\u00fcbitak 1001.<\/strong><\/p>\n\n\n\n<div class=\"wp-block-group is-layout-constrained wp-block-group-is-layout-constrained\">\n<div class=\"wp-block-columns is-layout-flex wp-container-7 wp-block-columns-is-layout-flex\">\n<div class=\"wp-block-column is-layout-flow wp-block-column-is-layout-flow\">\n<figure class=\"wp-block-image size-full is-resized\"><img decoding=\"async\" loading=\"lazy\" src=\"https:\/\/bdlab.bilkent.edu.tr\/wp-content\/uploads\/2023\/10\/embo_ig_logo_rgb_black_0-2.gif\" alt=\"\" class=\"wp-image-233\" style=\"width:575px;height:176px\" width=\"575\" height=\"176\"\/><\/figure>\n<\/div>\n\n\n\n<div class=\"wp-block-column is-layout-flow wp-block-column-is-layout-flow\">\n<figure class=\"wp-block-image size-large is-resized\"><img decoding=\"async\" loading=\"lazy\" src=\"https:\/\/bdlab.bilkent.edu.tr\/wp-content\/uploads\/2023\/10\/TUBITAK_logo.svg-e1697533046367-1024x265.png\" alt=\"\" class=\"wp-image-237\" style=\"width:269px;height:70px\" width=\"269\" height=\"70\" srcset=\"https:\/\/bdlab.bilkent.edu.tr\/wp-content\/uploads\/2023\/10\/TUBITAK_logo.svg-e1697533046367-1024x265.png 1024w, https:\/\/bdlab.bilkent.edu.tr\/wp-content\/uploads\/2023\/10\/TUBITAK_logo.svg-e1697533046367-300x78.png 300w, https:\/\/bdlab.bilkent.edu.tr\/wp-content\/uploads\/2023\/10\/TUBITAK_logo.svg-e1697533046367-768x199.png 768w, https:\/\/bdlab.bilkent.edu.tr\/wp-content\/uploads\/2023\/10\/TUBITAK_logo.svg-e1697533046367.png 1199w\" sizes=\"(max-width: 269px) 100vw, 269px\" \/><\/figure>\n\n\n\n<figure class=\"wp-block-image size-full is-resized\"><img decoding=\"async\" loading=\"lazy\" src=\"https:\/\/bdlab.bilkent.edu.tr\/wp-content\/uploads\/2023\/10\/tubitak-1001-3-e1697533083322.jpg\" alt=\"\" class=\"wp-image-234\" style=\"width:402px;height:92px\" width=\"402\" height=\"92\" srcset=\"https:\/\/bdlab.bilkent.edu.tr\/wp-content\/uploads\/2023\/10\/tubitak-1001-3-e1697533083322.jpg 573w, https:\/\/bdlab.bilkent.edu.tr\/wp-content\/uploads\/2023\/10\/tubitak-1001-3-e1697533083322-300x69.jpg 300w\" sizes=\"(max-width: 402px) 100vw, 402px\" \/><\/figure>\n<\/div>\n<\/div>\n<\/div>\n","protected":false},"excerpt":{"rendered":"<p>Physiological and Molecular Role of Enteric Nervous System in Homeostasis and Diseases As a scientist, looking forward in intestinal stem cell research, it is hard to think the excitement diminishing decades to come. The incentives are huge since we now have the opportunity to go from elaborate analysis of single cell transcriptomics to broad landscape [&hellip;]<\/p>\n","protected":false},"author":1,"featured_media":82,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"_links":{"self":[{"href":"https:\/\/bdlab.bilkent.edu.tr\/index.php?rest_route=\/wp\/v2\/pages\/10"}],"collection":[{"href":"https:\/\/bdlab.bilkent.edu.tr\/index.php?rest_route=\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/bdlab.bilkent.edu.tr\/index.php?rest_route=\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/bdlab.bilkent.edu.tr\/index.php?rest_route=\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/bdlab.bilkent.edu.tr\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=10"}],"version-history":[{"count":11,"href":"https:\/\/bdlab.bilkent.edu.tr\/index.php?rest_route=\/wp\/v2\/pages\/10\/revisions"}],"predecessor-version":[{"id":284,"href":"https:\/\/bdlab.bilkent.edu.tr\/index.php?rest_route=\/wp\/v2\/pages\/10\/revisions\/284"}],"wp:featuredmedia":[{"embeddable":true,"href":"https:\/\/bdlab.bilkent.edu.tr\/index.php?rest_route=\/wp\/v2\/media\/82"}],"wp:attachment":[{"href":"https:\/\/bdlab.bilkent.edu.tr\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=10"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}